Publications

List of current publications from the employees of the ISD

Publications

  1. 2021

    1. Trivedi, Z., Bleiler, C., Gehweiler, D., Gueorguiev-Rüegg, B., Ricken, T., Wagner, A., & Röhrle, O. (2021). Simulating vertebroplasty: A biomechanical challenge. PAMM, 20(1), Article 1. https://doi.org/10.1002/pamm.202000313
    2. Bertrand, F., Lambers, L., & Ricken, T. (2021). Least Squares Finite Element Method for Hepatic Sinusoidal Blood Flow. PAMM, 20(1), Article 1. https://doi.org/10.1002/pamm.202000306
    3. Thom, A., & Ricken, T. (2021). In Silico Modeling of Coupled Physical--Biogeochemical (P--BGC) Processes in Antarctic Sea Ice. PAMM, 20(1), Article 1. https://doi.org/10.1002/pamm.202000308
    4. Seyedpour, S. M., Valizadeh, I., Kirmizakis, P., Doherty, R., & Ricken, T. (2021). Optimization of the Groundwater Remediation Process Using a Coupled Genetic Algorithm-Finite Difference Method. Water, 13(3), 383. https://doi.org/10.3390/w13030383
    5. Suditsch, M., Schröder, P., Lambers, L., Ricken, T., Ehlers, W., & Wagner, A. (2021). Modelling basal--cell carcinoma behaviour in avascular skin. PAMM, 20(1), Article 1. https://doi.org/10.1002/pamm.202000283
    6. Suditsch, M., Schröder, P., Lambers, L., Ricken, T., Ehlers, W., & Wagner, A. (2021). Modelling basal-cell carcinoma behaviour in avascular skin. PAMM, 20(1), Article 1. https://doi.org/10.1002/pamm.202000283
    7. Keller, K., Wallmersperger, T., & Ricken, T. (2021). Sensitivity Analysis of a Simulated Hydrogel. PAMM, 20(1), Article 1. https://doi.org/10.1002/pamm.202000317
    8. Lambers, L., Suditsch, M., Wagner, A., & Ricken, T. (2021). A Multiscale and Multiphase Model of Function--Perfusion Growth Processes in the Human Liver. PAMM, 20(1), Article 1. https://doi.org/10.1002/pamm.202000290
    9. Mielke, A., & Ricken, T. (2021). Solving linear equation systems on noisy intermediate--scale quantum computers. PAMM, 20(1), Article 1. https://doi.org/10.1002/pamm.202000266
    10. Henning, C., Brodbeck, M., Koch, C., Staudacher, S., & Ricken, T. (2021). Phase--field model for erosion processes. PAMM, 20(1), Article 1. https://doi.org/10.1002/pamm.202000282
  2. 2020

    1. Ricken, T., Thom, A., Gehrke, T., Denecke, M., Widmann, R., Schulte, M., & Schmidt, T. C. (2020). Biological Driven Phase Transitions in Fully or Partly Saturated Porous Media: A Multi-Component FEM Simulation Based on the Theory of Porous Media. In P. Giovine, P. M. Mariano, & G. Mortara (Eds.), Views on Microstructures in Granular Materials (Vol. 44, pp. 157--183). Springer International Publishing. https://doi.org/10.1007/978-3-030-49267-08
    2. Ates, F., Brandenburg, J. E., & Kaufman, K. R. (2020). Effects of Selective Dorsal Rhizotomy on Ankle Joint Function in Patients With Cerebral Palsy. Frontiers in Pediatrics, 8(75), Article 75. https://doi.org/10.3389/fped.2020.00075
    3. Hopkins, G., Skatulla, S., Moj, L., Ricken, T., Ntusi, N., & Meintjes, E. (2020). A biphasic model for full cycle simulation of the human heart aimed at rheumatic heart disease. Computers & Structures, 232, 105920. https://doi.org/10.1016/j.compstruc.2018.02.012
  3. 2019

    1. Kaya, C. S., Bilgili, F., Akalan, N. E., Temelli, Y., Ates, F., & Yucesoy, C. A. (2019). Intraoperative experiments combined with gait analyses indicate that active state rather than passive dominates the spastic gracilis muscle’s joint movement limiting effect in cerebral palsy. Clin Biomech (Bristol, Avon), 68, 151–157. https://doi.org/10.1016/j.clinbiomech.2019.06.005
    2. Seyedpour, S. M., Janmaleki, M., Henning, C., Sanati-Nezhad, A., & Ricken, T. (2019). Contaminant transport in soil: A comparison of the Theory of Porous Media approach with the microfluidic visualisation. Science of the Total Environment, 686, 1272–1281.
    3. Seyedpour, S. M., Kirmizakis, P., Brennan, P., Doherty, R., & Ricken, T. (2019). Optimal remediation design and simulation of groundwater flow coupled to contaminant transport using genetic algorithm and radial point collocation method (RPCM). Science of The Total Environment, 669, 389–399.
    4. Ricken, T., & Lambers, L. (2019). On computational approaches of liver lobule function and perfusion simulation. GAMM-Mitteilungen, 42(4), e201900016. https://doi.org/10.1002/gamm.201900016
    5. Ates, F., Davies, B., Chopra, S., Coleman-Wood, K., Litchy, W., & Kaufman, K. R. (2019). Intramuscular Pressure of Human Tibialis Anterior Muscle Reflects in vivo Muscular Activity. Frontiers in Physiology, 10(196), 1–10. https://doi.org/10.3389/fphys.2019.00196
  4. 2018

    1. Ates, F., Andrade, R. J., Freitas, S. R., Hug, F., Lacourpaille, L., Gross, R., Yucesoy, C. A., & Nordez, A. (2018). Passive stiffness of monoarticular lower leg muscles is influenced by knee joint angle. Eur J Appl Physiol, 118(3), 585–593. https://doi.org/10.1007/s00421-018-3798-y
    2. Yucesoy, C. A., & Ates, F. (2018). BTX-A has notable effects contradicting some treatment aims in the rat triceps surae compartment, which are not confined to the muscles injected. J Biomech, 66, 78–85. https://doi.org/10.1016/j.jbiomech.2017.10.035
    3. Kaya, C. S., Temelli, Y., Ates, F., & Yucesoy, C. A. (2018). Effects of inter-synergistic mechanical interactions on the mechanical behaviour of activated spastic semitendinosus muscle of patients with cerebral palsy. J Mech Behav Biomed Mater, 77, 78–84. https://doi.org/10.1016/j.jmbbm.2017.08.040
    4. Ates, F., Temelli, Y., & Yucesoy, C. A. (2018). Effects of antagonistic and synergistic muscles’ co-activation on mechanics of activated spastic semitendinosus in children with cerebral palsy. Hum Mov Sci, 57, 103–110. https://doi.org/10.1016/j.humov.2017.11.011
    5. Ates, F., & Yucesoy, C. A. (2018). Botulinum toxin type-A affects mechanics of non-injected antagonistic rat muscles. J Mech Behav Biomed Mater, 84, 208–216. https://doi.org/10.1016/j.jmbbm.2018.05.027
    6. Ates, F., Davies, B., Chopra, S., Coleman-Wood, K., Litchy, W., & Kaufman, K. (2018). Intramuscular Pressure of Tibialis Anterior Reflects Ankle Torque but Does Not Follow Joint Angle-Torque Relationship. Frontiers in Physiology, 9, 1–9. https://doi.org/10.3389/fphys.2018.00022
    7. Seyedpour, S. M., Panagiotis, P., Rory, R., & Ricken, T. (2018). Theory of Porous Media approach to simulation of contaminant transport in groundwater: verifying the numerical results with sandbox experiment. EGU General Assembly Conference Abstracts, 20, 16944.
  5. 2017

    1. Yucesoy, C. A., Temelli, Y., & Ates, F. (2017). Intra-operatively measured spastic semimembranosus forces of children with cerebral palsy. J Electromyogr Kinesiol, 36, 49–55. https://doi.org/10.1016/j.jelekin.2017.07.003
  6. 2016

    1. Taranejoo, S., Janmaleki, M., Pachenari, M., Seyedpour, S. M., Chandrasekaran, R., Cheng, W., & Hourigan, K. (2016). Dual effect of F-actin targeted carrier combined with antimitotic drug on aggressive colorectal cancer cytoskeleton: Allying dissimilar cell cytoskeleton disrupting mechanisms. International Journal of Pharmaceutics, 513(1–2), 464–472.
    2. Ates, F., Temelli, Y., & Yucesoy, C. A. (2016). The mechanics of activated semitendinosus are not representative of the pathological knee joint condition of children with cerebral palsy. J Electromyogr Kinesiol, 28, 130–136. https://doi.org/10.1016/j.jelekin.2016.04.002
    3. Andrade, R. J., Nordez, A., Hug, F., Ates, F., Coppieters, M. W., Pezarat-Correia, P., & Freitas, S. R. (2016). Non-invasive assessment of sciatic nerve stiffness during human ankle motion using ultrasound shear wave elastography. Journal of Biomechanics, 49(3), 326–331. https://doi.org/10.1016/j.jbiomech.2015.12.017
    4. Janmaleki, M., Pachenari, M., Seyedpour, S. M., Shahghadami, R., & Sanati-Nezhad, A. (2016). Impact of simulated microgravity on cytoskeleton and viscoelastic properties of endothelial cell. Scientific Reports, 6(1), 1–11.
  7. 2015

    1. Yucesoy, C. A., Turkoglu, A. N., Umur, S., & Ates, F. (2015). Intact Muscle Compartment Exposed to Botulinum Toxin Type a Shows Compromised Intermuscular Mechanical Interaction. Muscle & Nerve, 51(1), 106–116. https://doi.org/10.1002/mus.24275
    2. Ates, F., Hug, F., Bouillard, K., Jubeau, M., Frappart, T., Couade, M., Bercoff, J., & Nordez, A. (2015). Muscle shear elastic modulus is linearly related to muscle torque over the entire range of isometric contraction intensity. J Electromyogr Kinesiol, 25(4), 703–708. https://doi.org/10.1016/j.jelekin.2015.02.005
    3. Le Sant, G., Ates, F., Brasseur, J. L., & Nordez, A. (2015). Elastography Study of Hamstring Behaviors during Passive Stretching. Plos One, 10(9), Article 9. https://doi.org/ARTN e0139272 10.1371/journal.pone.0139272
    4. Seyedpour, S. M., Pachenari, M., Janmaleki, M., Alizadeh, M., & Hosseinkhani, H. (2015). Effects of an antimitotic drug on mechanical behaviours of the cytoskeleton in distinct grades of colon cancer cells. Journal of Biomechanics, 48(6), 1172–1178.
    5. Akdeniz, Z. D., Bayramicli, M., Ates, F., Ozkan, N., Yucesoy, C. A., & Ercan, F. (2015). The role of botulinum toxin type a-induced motor endplates after peripheral nerve repair. Muscle Nerve, 52(3), 412–418. https://doi.org/10.1002/mus.24555
  8. 2014

    1. Ates, F., & Yucesoy, C. A. (2014). Effects of botulinum toxin type A on non-injected bi-articular muscle include a narrower length range of force exertion and increased passive force. Muscle Nerve, 49(6), 866–878. https://doi.org/10.1002/mus.23993
    2. Pachenari, M., Seyedpour, S. M., Janmaleki, M., Babazadeh Shayan, S., Taranejoo, S., & Hosseinkhani, H. (2014). Mechanical properties of cancer cytoskeleton depend on actin filaments to microtubules content: investigating different grades of colon cancer cell lines. Journal of Biomechanics, 47(2), 373–379.
    3. Gereli, A., Akgun, U., Uslu, S., Agir, I., Ates, F., & Nalbantoglu, U. (2014). The effect of organic silicon injection on Achilles tendon healing in rats. Acta Orthopaedica Et Traumatologica Turcica, 48(3), 346–354. https://doi.org/10.3944/Aott.2014.3162
    4. Zeytin, K., Ciloglu, N. S., Ates, F., Vardar Aker, F., & Ercan, F. (2014). The effects of resveratrol on tendon healing of diabetic rats. Acta Orthopaedica Et Traumatologica Turcica, 48(3), 355–362. https://doi.org/10.3944/Aott.2014.13.0096
    5. Ates, F., Temelli, Y., & Yucesoy, C. A. (2014). Intraoperative experiments show relevance of inter-antagonistic mechanical interaction for spastic muscle’s contribution to joint movement disorder. Clin Biomech (Bristol, Avon), 29(8), 943–949. https://doi.org/10.1016/j.clinbiomech.2014.06.010
    6. Ateş, F., Heybeli, N., & Yucesoy, C. A. (2014). Biomedical Engineering and Orthopedic Sports Medicine. Sports Injuries, 1–17.
    7. Babazadeh Shayan, S., Seyedpour, S. M., & Ommi, F. (2014). EFFECT OF FUEL ADDITIVES ON GASOLINE VOLATILITY.
  9. 2013

    1. Ates, F., Temelli, Y., & Yucesoy, C. A. (2013). Human spastic Gracilis muscle isometric forces measured intraoperatively as a function of knee angle show no abnormal muscular mechanics. Clin Biomech (Bristol, Avon), 28(1), 48–54. https://doi.org/10.1016/j.clinbiomech.2012.08.012
    2. Ates, F., Ozdeslik, R. N., Huijing, P. A., & A., Y. C. (2013). Muscle lengthening surgery causes differential acute mechanical effects in both targeted and non-targeted synergistic muscles. Journal of Electromyography and Kinesiology, 23, 1198–1205. https://doi.org/10.1016/j.jelekin.2013.05.010
  10. 2012

    1. Babazadeh Shayan, S., Seyedpour, S. M., & Ommi, F. (2012). Effect of oxygenates blending with gasoline to improve fuel properties. Chinese Journal of Mechanical Engineering, 25(4), 792–797.
    2. Alizadeh, M., Seyedpour, S. M., Mozafari, V., & Babazadeh Shayan, S. (2012). Calculation and analysis of velocity and viscous drag in an artery with a periodic pressure gradient. Chinese Journal of Mechanical Engineering, 25(4), 715–721.
    3. Karahan, M., Akgun, U., Turkoglu, A., Nuran, R., Ates, F., & Yucesoy, C. A. (2012). Pretzel knot compared with standard suture knots. Knee Surg Sports Traumatol Arthrosc, 20(11), 2302–2306. https://doi.org/10.1007/s00167-011-1788-2
    4. Yucesoy, C. A., Arıkan, Ö. E., & Ateş, F. (2012). BTX-A Administration to the Target Muscle Affects Forces of All Muscles Within an Intact Compartment and Epimuscular Myofascial Force Transmission. Journal of Biomechanical Engineering, 134, 111002-1–9.
  11. 2011

    1. Babazadeh Shayan, S., Seyedpour, S. M., Ommi, F., Moosavy, S. H., & Alizadeh, M. (2011). Impact of methanol–gasoline fuel blends on the performance and exhaust emissions of a SI engine. International Journal of Automotive Engineering, 1(4), 219–227.
  12. 2010

    1. Yucesoy, C. A., Ates, F., Akgun, U., & Karahan, M. (2010). Measurement of human Gracilis muscle isometric forces as a function of knee angle, intraoperatively. Journal of Biomechanics, 43(14), 2665–2671. https://doi.org/10.1016/j.jbiomech.2010.06.002
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