Publications

List of current publications from the employees of the ISD

Publications

  1. 2020

    1. Ates, F., Brandenburg, J. E., & Kaufman, K. R. (2020). Effects of Selective Dorsal Rhizotomy on Ankle Joint Function in Patients With Cerebral Palsy. Frontiers in Pediatrics, 8(75), Article 75. https://doi.org/10.3389/fped.2020.00075
    2. Armiti-Juber, A., & Rohde, C. (2020). On the Well-posedness of a Nonlinear Fourth-Order Extension of Richards’ Equation. J. Math. Anal. and Appl., 487(2), Article 2. https://doi.org/https://doi.org/10.1016/j.jmaa.2020.124005
  2. 2019

    1. Kaya, C. S., Bilgili, F., Akalan, N. E., Temelli, Y., Ates, F., & Yucesoy, C. A. (2019). Intraoperative experiments combined with gait analyses indicate that active state rather than passive dominates the spastic gracilis muscle’s joint movement limiting effect in cerebral palsy. Clin Biomech (Bristol, Avon), 68, 151–157. https://doi.org/10.1016/j.clinbiomech.2019.06.005
    2. Drieschner, M., Matthies, H. G., Hoang, T.-V., Rosić, B. V., Ricken, T., Henning, C., Ostermeyer, G.-P., Müller, M., Brumme, S., Srisupattarawanit, T., & others. (2019). Analysis of polymorphic data uncertainties in engineering applications. GAMM-Mitteilungen, e201900010.
    3. Henning, C., & Ricken, T. (2019). Polymorphic Uncertainty Quantification of Computational Soil and Earth Structure Simulations via the Variational Sensitivity Analysis. PAMM, e201900289.
    4. Egli, F., Ricken, T., Wang, X., & Pierce, D. M. (2019). A hyperelastic biphasic fiber reinforced model of articular cartilage incorporating the influences of osmotic pressure and damage. Advances in Engineering Materials, Structures and Systems: Innovations, Mechanics and Applications: Proceedings of the 7th International Conference on Structural Engineering, Mechanics and Computation (SEMC 2019), September 2-4, 2019, Cape Town, South Africa, 308.
    5. Egli, F., & Ricken, T. (2019). On Osmotic Pressure in Hyperelastic Biphasic Fiber--Reinforced Articular Cartilage. PAMM, 19(1), Article 1. https://doi.org/10.1002/pamm.201900355
    6. Schmidt, A., Henning, C., Herbrandt, S., Könke, C., Ickstadt, K., Ricken, T., & Lahmer, T. (2019). Numerical studies of earth structure assessment via the theory of porous media using fuzzy probability based random field material descriptions. GAMM-Mitteilungen, 42(1), e201900007.
    7. Thom, A., & Ricken, T. (2019). Development of a thermodynamically consistent model towards biogeochemical processes within Antarctic sea ice microstructure within the extended Theory of Porous Media (eTPM). Advances in Engineering Materials, Structures and Systems: Innovations, Mechanics and Applications: Proceedings of the 7th International Conference on Structural Engineering, Mechanics and Computation (SEMC 2019), September 2-4, 2019, Cape Town, South Africa, 292.
    8. Armiti-Juber, A., & Rohde, C. (2019). Existence of weak solutions for a nonlocal pseudo-parabolic model for Brinkman two-phase flow in asymptotically flat porous media. J. Math. Anal. and Appl., 477(1), 592–612. https://doi.org/https://doi.org/10.1016/j.jmaa.2019.04.049
    9. Ates, F., Davies, B., Chopra, S., Coleman-Wood, K., Litchy, W., & Kaufman, K. R. (2019). Intramuscular Pressure of Human Tibialis Anterior Muscle Reflects in vivo Muscular Activity. Frontiers in Physiology, 10(196), 1–10. https://doi.org/10.3389/fphys.2019.00196
    10. Thom, A., & Ricken, T. (2019). Towards a physical model of Antarctic sea ice microstructure including biogeochemical processes using the extended Theory of Porous Media. PAMM -- Proc. Appl. Math. Mech., 19, e201900285. https://doi.org/10.1002/pamm.201900285
    11. Henning, C., & Ricken, T. (2019). Transition of the variational sensitivity analysis to polymorphic uncertainty quantification to soil investigations. Advances in Engineering Materials, Structures and Systems: Innovations, Mechanics and Applications: Proceedings of the 7th International Conference on Structural Engineering, Mechanics and Computation (SEMC 2019), September 2-4, 2019, Cape Town, South Africa, 297–302.
    12. Pivovarov, D., Willner, K., Steinmann, P., Brumme, S., Müller, M., Srisupattarawanit, T., Ostermeyer, G.-P., Henning, C., Ricken, T., Kastian, S., & others. (2019). Challenges of order reduction techniques for problems involving polymorphic uncertainty. GAMM-Mitteilungen, e201900010.
  3. 2018

    1. Henning, C., Herbrandt, S., Ickstadt, K., & Ricken, T. (2018). Combining Finite Elements and Random Fields to Quantify Uncertainty in a Multi-phase Structural Analysis. PAMM, 18(1), e201800333.
    2. Ates, F., Andrade, R. J., Freitas, S. R., Hug, F., Lacourpaille, L., Gross, R., Yucesoy, C. A., & Nordez, A. (2018). Passive stiffness of monoarticular lower leg muscles is influenced by knee joint angle. Eur J Appl Physiol, 118(3), 585–593. https://doi.org/10.1007/s00421-018-3798-y
    3. Yucesoy, C. A., & Ates, F. (2018). BTX-A has notable effects contradicting some treatment aims in the rat triceps surae compartment, which are not confined to the muscles injected. J Biomech, 66, 78–85. https://doi.org/10.1016/j.jbiomech.2017.10.035
    4. Kaya, C. S., Temelli, Y., Ates, F., & Yucesoy, C. A. (2018). Effects of inter-synergistic mechanical interactions on the mechanical behaviour of activated spastic semitendinosus muscle of patients with cerebral palsy. J Mech Behav Biomed Mater, 77, 78–84. https://doi.org/10.1016/j.jmbbm.2017.08.040
    5. Armiti-Juber, A., & Rohde, C. (2018). On Darcy- and Brinkman-type models for two-phase flow in asymptotically flat domains. Computat. Geosci. https://doi.org/10.1007/s10596-018-9756-2
    6. Ates, F., Temelli, Y., & Yucesoy, C. A. (2018). Effects of antagonistic and synergistic muscles’ co-activation on mechanics of activated spastic semitendinosus in children with cerebral palsy. Hum Mov Sci, 57, 103–110. https://doi.org/10.1016/j.humov.2017.11.011
    7. Ates, F., & Yucesoy, C. A. (2018). Botulinum toxin type-A affects mechanics of non-injected antagonistic rat muscles. J Mech Behav Biomed Mater, 84, 208–216. https://doi.org/10.1016/j.jmbbm.2018.05.027
    8. Ates, F., Davies, B., Chopra, S., Coleman-Wood, K., Litchy, W., & Kaufman, K. (2018). Intramuscular Pressure of Tibialis Anterior Reflects Ankle Torque but Does Not Follow Joint Angle-Torque Relationship. Frontiers in Physiology, 9, 1–9. https://doi.org/https://doi.org/10.3389/fphys.2018.00022
    9. Thom, A., Ricken, T., Koßler, M., Gehrke, T., Denecke, M., Widmann, R., Schulte, M., & Schmidt, T. C. (2018). Numerical investigations of diffusion coefficients in the context of multi-component gas transport within the Theory of Porous Media. PAMM, 18(1), e201800446.
  4. 2017

    1. Schulte, M., Jochmann, M. A., Gehrke, T., Thom, A., Ricken, T., Denecke, M., & Schmidt, T. C. (2017). Characterization of methane oxidation in a simulated landfill cover system by comparing molecular and stable isotope mass balances. Waste Management, 69, 281--288. https://doi.org/10.1016/j.wasman.2017.07.032
    2. Yucesoy, C. A., Temelli, Y., & Ates, F. (2017). Intra-operatively measured spastic semimembranosus forces of children with cerebral palsy. J Electromyogr Kinesiol, 36, 49–55. https://doi.org/10.1016/j.jelekin.2017.07.003
    3. Henning, C., Thom, A., & Hettler, A. (2017). Numerical Investigations of the Effects of Dynamic Construction Processes on Deep Excavation Walls. In Holistic Simulation of Geotechnical Installation Processes (pp. 297--302). Springer. https://doi.org/10.1007/978-3-319-52590-7_13
    4. Henning, C., & Ricken, T. (2017). Polymorphic uncertainty quantification for stability analysis of fluid saturated soil and earth structures. PAMM, 17(1), 59--62.
  5. 2016

    1. Thom, A., & Hettler, A. (2016). Prediction of construction-induced deformations of deep excavation walls by the use of a holistic 3D-finite-element model. In Holistic Simulation of Geotechnical Installation Processes (pp. 231--239). Springer. https://doi.org/10.1007/978-3-319-23159-4_11
    2. Ates, F., Temelli, Y., & Yucesoy, C. A. (2016). The mechanics of activated semitendinosus are not representative of the pathological knee joint condition of children with cerebral palsy. J Electromyogr Kinesiol, 28, 130–136. https://doi.org/10.1016/j.jelekin.2016.04.002
    3. Andrade, R. J., Nordez, A., Hug, F., Ates, F., Coppieters, M. W., Pezarat-Correia, P., & Freitas, S. R. (2016). Non-invasive assessment of sciatic nerve stiffness during human ankle motion using ultrasound shear wave elastography. Journal of Biomechanics, 49(3), 326–331. https://doi.org/10.1016/j.jbiomech.2015.12.017
  6. 2015

    1. Thom, A., Ricken, T., Bluhm, J., Widmann, R., Denecke, M., & Gehrke, T. (2015). Validation of a coupled FE-model for the simulation of methane oxidation via thermal imaging. PAMM, 15(1), 433--434. https://doi.org/10.1002/pamm.201510207
    2. Yucesoy, C. A., Turkoglu, A. N., Umur, S., & Ates, F. (2015). Intact Muscle Compartment Exposed to Botulinum Toxin Type a Shows Compromised Intermuscular Mechanical Interaction. Muscle & Nerve, 51(1), 106–116. https://doi.org/10.1002/mus.24275
    3. Ates, F., Hug, F., Bouillard, K., Jubeau, M., Frappart, T., Couade, M., Bercoff, J., & Nordez, A. (2015). Muscle shear elastic modulus is linearly related to muscle torque over the entire range of isometric contraction intensity. J Electromyogr Kinesiol, 25(4), 703–708. https://doi.org/10.1016/j.jelekin.2015.02.005
    4. Le Sant, G., Ates, F., Brasseur, J. L., & Nordez, A. (2015). Elastography Study of Hamstring Behaviors during Passive Stretching. Plos One, 10(9), Article 9. https://doi.org/ARTN e0139272 10.1371/journal.pone.0139272
    5. Akdeniz, Z. D., Bayramicli, M., Ates, F., Ozkan, N., Yucesoy, C. A., & Ercan, F. (2015). The role of botulinum toxin type a-induced motor endplates after peripheral nerve repair. Muscle Nerve, 52(3), 412–418. https://doi.org/10.1002/mus.24555
  7. 2014

    1. Ates, F., & Yucesoy, C. A. (2014). Effects of botulinum toxin type A on non-injected bi-articular muscle include a narrower length range of force exertion and increased passive force. Muscle Nerve, 49(6), 866–878. https://doi.org/10.1002/mus.23993
    2. Armiti-Juber, A., & Rohde, C. (2014). Almost parallel flows in porous media, Finite Volumes for Complex Applications VII-Elliptic, Parabolic and Hyperbolic Problems. In J. Fuhrmann, M. Ohlberger, & C. Rohde (Eds.), Finite Volumes for Complex Applications VII-Elliptic, Parabolic and Hyperbolic Problems: FVCA 7, Berlin, June 2014 (pp. 873--881). Springer International Publishing. https://doi.org/10.1007/978-3-319-05591-6_88
    3. Gereli, A., Akgun, U., Uslu, S., Agir, I., Ates, F., & Nalbantoglu, U. (2014). The effect of organic silicon injection on Achilles tendon healing in rats. Acta Orthopaedica Et Traumatologica Turcica, 48(3), 346–354. https://doi.org/10.3944/Aott.2014.3162
    4. Ricken, T., Sindern, A., Bluhm, J., Widmann, R., Denecke, M., Gehrke, T., & Schmidt, T. C. (2014). Concentration driven phase transitions in multiphase porous media with application to methane oxidation in landfill cover layers. ZAMM-Journal of Applied Mathematics and Mechanics/Zeitschrift Für Angewandte Mathematik Und Mechanik, 94(7–8), 609--622. https://doi.org/10.1002/zamm.201200198
    5. Zeytin, K., Ciloglu, N. S., Ates, F., Vardar Aker, F., & Ercan, F. (2014). The effects of resveratrol on tendon healing of diabetic rats. Acta Orthopaedica Et Traumatologica Turcica, 48(3), 355–362. https://doi.org/10.3944/Aott.2014.13.0096
    6. Ates, F., Temelli, Y., & Yucesoy, C. A. (2014). Intraoperative experiments show relevance of inter-antagonistic mechanical interaction for spastic muscle’s contribution to joint movement disorder. Clin Biomech (Bristol, Avon), 29(8), 943–949. https://doi.org/10.1016/j.clinbiomech.2014.06.010
    7. Sindern, A., Ricken, T., Bluhm, J., Widmann, R., Denecke, M., & Gehrke, T. (2014). A coupled multi-component approach for bacterial methane oxidation in landfill cover layers. PAMM, 14(1), 469--470. https://doi.org/10.1002/pamm.201410222
    8. Ateş, F., Heybeli, N., & Yucesoy, C. A. (2014). Biomedical Engineering and Orthopedic Sports Medicine. Sports Injuries, 1–17.
  8. 2013

    1. Sindern, A., Ricken, T., Bluhm, J., Widmann, R., & Denecke, M. (2013). Bacterial methane oxidation in landfill cover layers-a coupled FE multiphase description. PAMM, 13(1), 193--194. https://doi.org/10.1002/pamm.201310092
    2. Ates, F., Temelli, Y., & Yucesoy, C. A. (2013). Human spastic Gracilis muscle isometric forces measured intraoperatively as a function of knee angle show no abnormal muscular mechanics. Clin Biomech (Bristol, Avon), 28(1), 48–54. https://doi.org/10.1016/j.clinbiomech.2012.08.012
    3. Ates, F., Ozdeslik, R. N., Huijing, P. A., & A., Y. C. (2013). Muscle lengthening surgery causes differential acute mechanical effects in both targeted and non-targeted synergistic muscles. Journal of Electromyography and Kinesiology, 23, 1198–1205. https://doi.org/10.1016/j.jelekin.2013.05.010
  9. 2012

    1. Sindern, A., Ricken, T., Bluhm, J., Denecke, M., & Schmidt, T. C. (2012). Phase transition in methane oxidation layers--a coupled FE multiphase description. PAMM, 12(1), 371--372. https://doi.org/10.1002/pamm.201210174
    2. Karahan, M., Akgun, U., Turkoglu, A., Nuran, R., Ates, F., & Yucesoy, C. A. (2012). Pretzel knot compared with standard suture knots. Knee Surg Sports Traumatol Arthrosc, 20(11), 2302–2306. https://doi.org/10.1007/s00167-011-1788-2
    3. Yucesoy, C. A., Arıkan, Ö. E., & Ateş, F. (2012). BTX-A Administration to the Target Muscle Affects Forces of All Muscles Within an Intact Compartment and Epimuscular Myofascial Force Transmission. Journal of Biomechanical Engineering, 134, 111002-1–9.
  10. 2010

    1. Yucesoy, C. A., Ates, F., Akgun, U., & Karahan, M. (2010). Measurement of human Gracilis muscle isometric forces as a function of knee angle, intraoperatively. Journal of Biomechanics, 43(14), 2665–2671. https://doi.org/10.1016/j.jbiomech.2010.06.002
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